Fitch-Margoliash method with contemporary tips, version 3.573c
__ __ 2
\ \ (Obs - Exp)
Sum of squares = /_ /_ ------------
2
i j Obs
+--------------------A1101
+-11
+--17 +--------------------A0301
! !
+-14 +---------------------A6801
! !
+--------------15 +-------------------------A3101
! !
+------------16 +----------------------------A3301
! !
! +--------------------------------------------A6601
!
! +--------------------------------------------------Cw0304
! +----53
! ! +--------------------------------------------------Cw0102
! !
! ! +-----------------A0206
! ! +-------5
! ! ! +-----------------A0203
! ! +-------2
! ! ! ! +-----------------A0205
! ! ! ! +---4
! +-52 +------8 +---1 +-----------------A0202
! ! ! ! ! !
! ! ! ! ! +---------------------A0201
! ! ! +--6 !
--9 ! ! ! ! +---------------------------------A0214
! ! ! +--3 !
! ! ! ! ! +----------------------------------------A0207
! ! ! +----7 !
! ! ! ! ! +------------------------------------------A0204
! ! +-----18 !
! ! ! +--------------------------------------------A0209
! ! !
! ! +-------------------------------------------------A6802
! !
! ! +--------B2705
! ! +--32
! ! +----31 +--------B2704
! ! ! !
! ! +--33 +------------B2703
! ! ! !
! ! +-------30 +------------------B2706
! ! ! !
+-12 +-34 +----------------------B2701
! ! !
! +--------29 +--------------------------------B2709
! ! !
! +-------38 +-----------------------------------B2702
! ! !
! +--27 +--------------------------------------------B3909
! ! !
! ! +-----------------------------------------------------B1517
! !
! ! +-----------------------------B5801
! ! +-----50
! ! ! +-----------------------------B5702
! ! +-------49
! ! ! ! +-----------------------------B5701
! ! +---25 +-----48
! ! ! ! +-----------------------------B1513
! ! +-41 !
! ! ! ! +---------------------------------------------B4403
! ! +--54 !
! ! ! ! +-------------------------------------------------B4402
! ! ! !
! ! +-40 +--------------------------------------------------Cw0702
+-23 ! !
! ! ! +--------------------------------B4002
! ! +--------------------39
! ! +--------------------------------A2902
! +-28
! ! ! +--------------B1510
! ! ! +------------24
! ! ! +--------------------37 +--------------B1509
! ! ! ! !
! ! +---19 +----------------------------B39011
! ! !
! ! ! +--------------------------------------B3801
! ! +-----------36
! ! +--------------------------------------A2402
! !
! ! +-----B5103
! ! +--44
! ! +------43 +-----B5101
+-10 ! !
! ! +---------B5102
! !
! +-42 +--------B5401
! ! ! +-45
! ! ! +-46 +--------B0702
! ! ! ! !
! +-----------------------------47 +---35 +---------B5301
! ! ! !
! ! ! +------------B3501
! +--51 !
! ! ! +--------------------B5502
! ! !
! ! +--------------------------------------------------B8
! !
+-13 +-----------------------------B1508
! +----------22
! +---21 +-----------------------------B1501_B62
! ! !
! +---20 +-----------------------------------------B1502
! ! !
+--26 +----------------------------------------------A1
!
+---------------------------------------------------B1516
Sum of squares = 10.087
Average percent standard deviation = 5.82985
examined 19542 trees
From To Length Time
---- -- ------ ----
11 A1101 3.50000 9.93733
17 11 0.21681 6.43733
11 A0301 3.50000 9.93733
14 17 0.59691 6.22052
17 A6801 3.71681 9.93733
15 14 0.53530 5.62361
14 A3101 4.31373 9.93733
16 15 2.71940 5.08831
15 A3301 4.84902 9.93733
9 16 2.36891 2.36891
16 A6601 7.56842 9.93733
53 Cw0304 8.50000 9.93733
52 53 1.01197 1.43733
53 Cw0102 8.50000 9.93733
12 52 0.32395 0.42536
5 A0206 3.00000 9.93733
2 5 1.33931 6.93733
5 A0203 3.00000 9.93733
8 2 1.31948 5.59803
4 A0205 3.00000 9.93733
1 4 0.71681 6.93733
4 A0202 3.00000 9.93733
2 1 0.62249 6.22052
1 A0201 3.71681 9.93733
6 8 1.21751 4.27855
8 A0214 5.65879 9.93733
3 6 0.22330 3.06104
6 A0207 6.87629 9.93733
7 3 0.44859 2.83774
3 A0204 7.09960 9.93733
18 7 0.81636 2.38915
7 A0209 7.54818 9.93733
52 18 1.14743 1.57279
18 A6802 8.36454 9.93733
9 12 0.10142 0.10142
32 B2705 1.50000 9.93733
31 32 0.69512 8.43733
32 B2704 1.50000 9.93733
33 31 0.92477 7.74221
31 B2703 2.19512 9.93733
30 33 0.72346 6.81744
33 B2706 3.11989 9.93733
34 30 1.56596 6.09399
30 B2701 3.84335 9.93733
29 34 0.49977 4.52803
34 B2709 5.40931 9.93733
38 29 1.61550 4.02826
29 B2702 5.90908 9.93733
27 38 1.48555 2.41275
38 B3909 7.52458 9.93733
23 27 0.72199 0.92720
27 B1517 9.01013 9.93733
12 23 0.10379 0.20521
50 B5801 5.00000 9.93733
49 50 1.11060 4.93733
50 B5702 5.00000 9.93733
25 49 1.46747 3.82674
48 B5701 5.00000 9.93733
49 48 1.11060 4.93733
48 B1513 5.00000 9.93733
41 25 0.80396 2.35926
25 B4403 7.57807 9.93733
54 41 0.18751 1.55531
41 B4402 8.38203 9.93733
40 54 0.62037 1.36780
54 Cw0702 8.56953 9.93733
28 40 0.31445 0.74743
39 B4002 5.50000 9.93733
40 39 3.68991 4.43733
39 A2902 5.50000 9.93733
10 28 0.17296 0.43297
24 B1510 2.50000 9.93733
37 24 2.40099 7.43733
24 B1509 2.50000 9.93733
19 37 3.72968 5.03634
37 B39011 4.90099 9.93733
28 19 0.87369 1.30666
36 B3801 6.50000 9.93733
19 36 2.13067 3.43733
36 A2402 6.50000 9.93733
23 10 0.05480 0.26001
44 B5103 1.00000 9.93733
43 44 0.68000 8.93733
44 B5101 1.00000 9.93733
42 43 1.28632 8.25733
43 B5102 1.68000 9.93733
47 42 0.46951 6.97102
45 B5401 1.50000 9.93733
46 45 0.18000 8.43733
45 B0702 1.50000 9.93733
35 46 0.44121 8.25733
46 B5301 1.68000 9.93733
42 35 0.84510 7.81612
35 B3501 2.12121 9.93733
51 47 5.10557 6.50151
47 B5502 3.43582 9.93733
13 51 0.73168 1.39594
51 B8 8.54139 9.93733
10 13 0.40425 0.66426
22 B1508 5.00000 9.93733
21 22 2.00000 4.93733
22 B1501_B62 5.00000 9.93733
20 21 0.83335 2.93733
21 B1502 7.00000 9.93733
26 20 0.78124 2.10399
20 A1 7.83335 9.93733
13 26 0.65848 1.32274
26 B1516 8.61459 9.93733
Dendrogram was derived using the pachage PHYLIP from a distance matrix that was created by comparing the overlap between the set of peptides binder predicted by the HLA specific profiles shown here.